HL_5H5U_056

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5H5U|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_056 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0939

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

5H5U|1|A|C|2248
5H5U|1|A|U|2249
5H5U|1|A|G|2250
5H5U|1|A|G|2251
5H5U|1|A|G|2252
5H5U|1|A|G|2253
5H5U|1|A|C|2254
5H5U|1|A|G|2255
5H5U|1|A|G|2256

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27