HL_5H5U_081

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_081 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0526

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5H5U|1|h|U|296
5H5U|1|h|G|297
5H5U|1|h|A|298
5H5U|1|h|G|299
5H5U|1|h|A|300
5H5U|1|h|G|301

Current chains

Chain h

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S4

Chain l

30S ribosomal protein S5

Chain s

30S ribosomal protein S12

Chain x

30S ribosomal protein S17