HL_5H5U_086

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5H5U|1|h|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5H5U_086 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1283

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5H5U|1|h|G|462
5H5U|1|h|U|463
5H5U|1|h|U|464
5H5U|1|h|A|465
5H5U|1|h|A|466
5H5U|1|h|U|467
5H5U|1|h|A|468
5H5U|1|h|C|469
5H5U|1|h|C|470

Current chains

Chain h

16S rRNA

Nearby chains