HL_5HAU_058

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5HAU|1|1A|U|2417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0655

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5HAU|1|1A|C|2415
5HAU|1|1A|G|2416
5HAU|1|1A|U|2417
5HAU|1|1A|G|2418
5HAU|1|1A|U|2419
5HAU|1|1A|G|2420
5HAU|1|1A|G|2421
5HAU|1|1A|A|2422
5HAU|1|1A|A|2423
5HAU|1|1A|G|2424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1N

50S ribosomal protein L15

Chain 1Z

50S ribosomal protein L28