HL_5HAU_096

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

5HAU|1|1a|U|1119, 5HAU|1|1a|C|1120, 5HAU|1|1a|G|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_096 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3498

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HAU|1|1a|G|1117
5HAU|1|1a|U|1118
5HAU|1|1a|U|1119
5HAU|1|1a|C|1120
5HAU|1|1a|G|1121
5HAU|1|1a|G|1122
5HAU|1|1a|C|1123

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains