HL_5HAU_117

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5HAU|1|2A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_117 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0735

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5HAU|1|2A|G|350
5HAU|1|2A|U|351
5HAU|1|2A|G|352
5HAU|1|2A|A|353
5HAU|1|2A|A|354
5HAU|1|2A|A|355
5HAU|1|2A|G|356
5HAU|1|2A|C|357
5HAU|1|2A|C|358

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L24