HL_5HAU_118

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5HAU|1|2A|G|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_118 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0677

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5HAU|1|2A|G|408
5HAU|1|2A|U|409
5HAU|1|2A|U|410
5HAU|1|2A|C|411
5HAU|1|2A|G|412
5HAU|1|2A|U|413
5HAU|1|2A|G|414
5HAU|1|2A|G|415
5HAU|1|2A|A|416
5HAU|1|2A|G|417
5HAU|1|2A|C|418

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L15

Chain 2Z

50S ribosomal protein L28