HL_5HAU_160

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5HAU|1|2A|G|2261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_160 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.073

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HAU|1|2A|C|2259
5HAU|1|2A|U|2260
5HAU|1|2A|G|2261
5HAU|1|2A|G|2262
5HAU|1|2A|G|2263
5HAU|1|2A|G|2264
5HAU|1|2A|C|2265
5HAU|1|2A|G|2266
5HAU|1|2A|G|2267

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L16

Chain 2Y

50S ribosomal protein L27

Chain 2w

Transfer RNA; tRNA