HL_5HAU_182

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

5HAU|1|2a|U|190, 5HAU|1|2a|G|191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_182 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1504

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

5HAU|1|2a|C|187
5HAU|1|2a|C|188
5HAU|1|2a|U|189
5HAU|1|2a|U|190
5HAU|1|2a|G|191
5HAU|1|2a|G|192

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17