HL_5HAU_187

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5HAU|1|2a|A|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_187 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1233

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5HAU|1|2a|C|338
5HAU|1|2a|U|339
5HAU|1|2a|A|340
5HAU|1|2a|C|341
5HAU|1|2a|G|342
5HAU|1|2a|G|343

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2M

50S ribosomal protein L14

Chain 2R

50S ribosomal protein L19