HL_5HAU_222

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HAU_222 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1269

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5HAU|1|2A|G|2315
5HAU|1|2A|A|2316
5HAU|1|2A|C|2317
5HAU|1|2A|G|2318
5HAU|1|2A|G|2319
5HAU|1|2A|A|2320
5HAU|1|2A|A|2321
5HAU|1|2A|A|2322
5HAU|1|2A|U|2323

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5