HL_5HC9_003
3D structure
- PDB id
- 5HC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HC9_003 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.1303
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 137
Unit IDs
5HC9|1|C|G|53
5HC9|1|C|U|54
5HC9|1|C|U|55
5HC9|1|C|C|56
5HC9|1|C|G|57
5HC9|1|C|A|58
5HC9|1|C|U|59
5HC9|1|C|U|60
5HC9|1|C|C|61
Current chains
- Chain C
- tRNAphe
Nearby chains
- Chain A
- tRNA nucleotidyl transferase-related protein
Coloring options: