HL_5HCP_073

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CCCGGGGAAACUCGGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|1a|C|148
5HCP|1|1a|C|149
5HCP|1|1a|C|150
5HCP|1|1a|G|151
5HCP|1|1a|G|152
5HCP|1|1a|G|153
5HCP|1|1a|G|154
5HCP|1|1a|A|155
5HCP|1|1a|A|156
5HCP|1|1a|A|157
5HCP|1|1a|C|158
5HCP|1|1a|U|159
5HCP|1|1a|C|160
5HCP|1|1a|G|161
5HCP|1|1a|G|162
5HCP|1|1a|G|163

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20