HL_5HCP_099
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5HCP|1|1a|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HCP_099 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1085
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5HCP|1|1a|G|1338
5HCP|1|1a|A|1339
5HCP|1|1a|U|1340
5HCP|1|1a|C|1341
5HCP|1|1a|A|1342
5HCP|1|1a|G|1343
5HCP|1|1a|C|1344
5HCP|1|1a|C|1345
5HCP|1|1a|A|1346
5HCP|1|1a|U|1347
5HCP|1|1a|G|1348
5HCP|1|1a|C|1349
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1m
- 30S ribosomal protein S13
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1u
- 30S ribosomal protein Thx
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