HL_5HCP_216

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GCUUAGAAGCAGCC

Length

14 nucleotides

Bulged bases

5HCP|1|2A|A|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCP_216 not in the Motif Atlas

Homologous match to HL_7A0S_028

Geometric discrepancy: 0.4154

The information below is about HL_7A0S_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63355.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5HCP|1|2A|G|1108
5HCP|1|2A|C|1109
5HCP|1|2A|U|1110
5HCP|1|2A|U|1111
5HCP|1|2A|A|1112
5HCP|1|2A|G|1113
5HCP|1|2A|A|1114
5HCP|1|2A|A|1115
5HCP|1|2A|G|1116
5HCP|1|2A|C|1117
5HCP|1|2A|A|1118
5HCP|1|2A|G|1119
5HCP|1|2A|C|1120
5HCP|1|2A|C|1121

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25