HL_5HCQ_002

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_002 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.0739

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5HCQ|1|1A|C|85
5HCQ|1|1A|G|86
5HCQ|1|1A|G|87
5HCQ|1|1A|U|88
5HCQ|1|1A|A|89
5HCQ|1|1A|G|90
5HCQ|1|1A|C|91
5HCQ|1|1A|G|92
5HCQ|1|1A|G|93

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L29

Chain 1X

50S ribosomal protein L23

Chain 1Y

50S ribosomal protein L24