HL_5HCQ_038

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5HCQ|1|1A|A|1659, 5HCQ|1|1A|A|1661, 5HCQ|1|1A|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0412

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5HCQ|1|1A|C|1657
5HCQ|1|1A|G|1658
5HCQ|1|1A|A|1659
5HCQ|1|1A|C|1660
5HCQ|1|1A|A|1661
5HCQ|1|1A|C|1662
5HCQ|1|1A|A|1663
5HCQ|1|1A|G|1664

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1W

50S ribosomal protein L22