HL_5HCQ_071

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCCGGGGAAACUCGGG

Length

16 nucleotides

Bulged bases

5HCQ|1|1a|A|155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|1a|C|148
5HCQ|1|1a|C|149
5HCQ|1|1a|C|150
5HCQ|1|1a|G|151
5HCQ|1|1a|G|152
5HCQ|1|1a|G|153
5HCQ|1|1a|G|154
5HCQ|1|1a|A|155
5HCQ|1|1a|A|156
5HCQ|1|1a|A|157
5HCQ|1|1a|C|158
5HCQ|1|1a|U|159
5HCQ|1|1a|C|160
5HCQ|1|1a|G|161
5HCQ|1|1a|G|162
5HCQ|1|1a|G|163

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20