HL_5HCQ_131

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

5HCQ|1|2A|A|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|2A|G|1107
5HCQ|1|2A|G|1108
5HCQ|1|2A|C|1109
5HCQ|1|2A|U|1110
5HCQ|1|2A|U|1111
5HCQ|1|2A|A|1112
5HCQ|1|2A|G|1113
5HCQ|1|2A|A|1114
5HCQ|1|2A|A|1115
5HCQ|1|2A|G|1116
5HCQ|1|2A|C|1117
5HCQ|1|2A|A|1118
5HCQ|1|2A|G|1119
5HCQ|1|2A|C|1120
5HCQ|1|2A|C|1121

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25