HL_5HCQ_138

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5HCQ|1|2A|U|1441, 5HCQ|1|2A|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_138 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0576

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5HCQ|1|2A|G|1434
5HCQ|1|2A|U|1435
5HCQ|1|2A|U|1436
5HCQ|1|2A|A|1437
5HCQ|1|2A|A|1438
5HCQ|1|2A|U|1439
5HCQ|1|2A|A|1440
5HCQ|1|2A|U|1441
5HCQ|1|2A|U|1442
5HCQ|1|2A|C|1443

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23