HL_5HCQ_154

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UCGCGCGG

Length

8 nucleotides

Bulged bases

5HCQ|1|2A|C|2204

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|2A|U|2123
5HCQ|1|2A|C|2124
5HCQ|1|2A|G|2125
5HCQ|1|2A|C|2204
5HCQ|1|2A|G|2205
5HCQ|1|2A|C|2206
5HCQ|1|2A|G|2207
5HCQ|1|2A|G|2208

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9