HL_5HCQ_156

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5HCQ|1|2A|G|2261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_156 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0888

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|2A|C|2259
5HCQ|1|2A|U|2260
5HCQ|1|2A|G|2261
5HCQ|1|2A|G|2262
5HCQ|1|2A|G|2263
5HCQ|1|2A|G|2264
5HCQ|1|2A|C|2265
5HCQ|1|2A|G|2266
5HCQ|1|2A|G|2267

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2x

Transfer RNA; tRNA