HL_5HCQ_192

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

5HCQ|1|2a|U|823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HCQ_192 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.3817

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5HCQ|1|2a|G|821
5HCQ|1|2a|G|822
5HCQ|1|2a|U|823
5HCQ|1|2a|C|824
5HCQ|1|2a|U|825
5HCQ|1|2a|C|826
5HCQ|1|2a|C|827

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2r

30S ribosomal protein S18