HL_5HD1_141

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5HD1|1|2A|U|1441, 5HD1|1|2A|U|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_141 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0965

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5HD1|1|2A|G|1434
5HD1|1|2A|U|1435
5HD1|1|2A|U|1436
5HD1|1|2A|A|1437
5HD1|1|2A|A|1438
5HD1|1|2A|U|1439
5HD1|1|2A|A|1440
5HD1|1|2A|U|1441
5HD1|1|2A|U|1442
5HD1|1|2A|C|1443

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23