HL_5HD1_159

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5HD1|1|2A|G|2261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_159 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1021

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5HD1|1|2A|C|2259
5HD1|1|2A|U|2260
5HD1|1|2A|G|2261
5HD1|1|2A|G|2262
5HD1|1|2A|G|2263
5HD1|1|2A|G|2264
5HD1|1|2A|C|2265
5HD1|1|2A|G|2266
5HD1|1|2A|G|2267

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2x

Transfer RNA; tRNA