HL_5HD1_181
3D structure
- PDB id
- 5HD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUUGG
- Length
- 6 nucleotides
- Bulged bases
- 5HD1|1|2a|U|190, 5HD1|1|2a|G|191
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HD1_181 not in the Motif Atlas
- Homologous match to HL_4LFB_004
- Geometric discrepancy: 0.2461
- The information below is about HL_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
5HD1|1|2a|C|187
5HD1|1|2a|C|188
5HD1|1|2a|U|189
5HD1|1|2a|U|190
5HD1|1|2a|G|191
5HD1|1|2a|G|192
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2q
- 30S ribosomal protein S17
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