HL_5HD1_185

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HD1_185 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0914

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5HD1|1|2a|C|316
5HD1|1|2a|A|317
5HD1|1|2a|C|318
5HD1|1|2a|U|319
5HD1|1|2a|G|320
5HD1|1|2a|A|321
5HD1|1|2a|G|322
5HD1|1|2a|A|323
5HD1|1|2a|C|324
5HD1|1|2a|A|325
5HD1|1|2a|C|326
5HD1|1|2a|G|327
5HD1|1|2a|G|328
5HD1|1|2a|G|329

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20