HL_5HD1_213

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCGGGGAAACUCGGG

Length

16 nucleotides

Bulged bases

5HD1|1|1a|A|155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HD1|1|1a|C|148
5HD1|1|1a|C|149
5HD1|1|1a|C|150
5HD1|1|1a|G|151
5HD1|1|1a|G|152
5HD1|1|1a|G|153
5HD1|1|1a|G|154
5HD1|1|1a|A|155
5HD1|1|1a|A|156
5HD1|1|1a|A|157
5HD1|1|1a|C|158
5HD1|1|1a|U|159
5HD1|1|1a|C|160
5HD1|1|1a|G|161
5HD1|1|1a|G|162
5HD1|1|1a|G|163

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20