HL_5HKV_004

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.1789

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5HKV|1|X|A|136
5HKV|1|X|G|137
5HKV|1|X|U|138
5HKV|1|X|U|139
5HKV|1|X|A|140
5HKV|1|X|U|141
5HKV|1|X|G|142
5HKV|1|X|U|143

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23