HL_5HKV_005

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UAUGUAUACAUAGCAUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|U|155
5HKV|1|X|A|156
5HKV|1|X|U|157
5HKV|1|X|G|158
5HKV|1|X|U|159
5HKV|1|X|A|162
5HKV|1|X|U|163
5HKV|1|X|A|164
5HKV|1|X|C|165
5HKV|1|X|A|166
5HKV|1|X|U|167
5HKV|1|X|A|168
5HKV|1|X|G|169
5HKV|1|X|C|170
5HKV|1|X|A|171
5HKV|1|X|U|172
5HKV|1|X|A|173

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L28