HL_5HKV_025

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5HKV|1|X|U|872, 5HKV|1|X|G|875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_025 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0838

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

5HKV|1|X|U|871
5HKV|1|X|U|872
5HKV|1|X|U|873
5HKV|1|X|A|874
5HKV|1|X|G|875
5HKV|1|X|G|876

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15