HL_5HKV_026

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GACGAGGGUUACCGAAUU

Length

18 nucleotides

Bulged bases

5HKV|1|X|G|925

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_026 not in the Motif Atlas

Geometric match to HL_5E6M_002

Geometric discrepancy: 0.3955

The information below is about HL_5E6M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10874.1

Basepair signature

cWW-cWW

Number of instances in this motif group

4

Unit IDs

5HKV|1|X|G|919
5HKV|1|X|A|920
5HKV|1|X|C|921
5HKV|1|X|G|922
5HKV|1|X|A|923
5HKV|1|X|G|924
5HKV|1|X|G|925
5HKV|1|X|G|938
5HKV|1|X|U|939
5HKV|1|X|U|940
5HKV|1|X|A|941
5HKV|1|X|C|942
5HKV|1|X|C|943
5HKV|1|X|G|944
5HKV|1|X|A|945
5HKV|1|X|A|946
5HKV|1|X|U|947
5HKV|1|X|U|948

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25