HL_5HKV_029

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCCAGACAAUAGUAGUCGAG

Length

20 nucleotides

Bulged bases

5HKV|1|X|A|1090

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|C|1087
5HKV|1|X|C|1088
5HKV|1|X|C|1089
5HKV|1|X|A|1090
5HKV|1|X|G|1091
5HKV|1|X|A|1092
5HKV|1|X|C|1093
5HKV|1|X|A|1094
5HKV|1|X|A|1095
5HKV|1|X|U|1097
5HKV|1|X|A|1098
5HKV|1|X|G|1099
5HKV|1|X|U|1149
5HKV|1|X|A|1150
5HKV|1|X|G|1151
5HKV|1|X|U|1152
5HKV|1|X|C|1153
5HKV|1|X|G|1154
5HKV|1|X|A|1155
5HKV|1|X|G|1156

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6