HL_5HKV_035

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5HKV|1|X|U|1433, 5HKV|1|X|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_035 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1211

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5HKV|1|X|G|1426
5HKV|1|X|U|1427
5HKV|1|X|U|1428
5HKV|1|X|G|1429
5HKV|1|X|A|1430
5HKV|1|X|U|1431
5HKV|1|X|A|1432
5HKV|1|X|U|1433
5HKV|1|X|U|1434
5HKV|1|X|C|1435

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23