HL_5HKV_036

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAGUAAUCCGGUACUCGGG

Length

20 nucleotides

Bulged bases

5HKV|1|X|C|1541, 5HKV|1|X|G|1550

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|C|1524
5HKV|1|X|G|1526
5HKV|1|X|A|1527
5HKV|1|X|G|1528
5HKV|1|X|U|1529
5HKV|1|X|A|1530
5HKV|1|X|A|1539
5HKV|1|X|U|1540
5HKV|1|X|C|1541
5HKV|1|X|C|1542
5HKV|1|X|G|1543
5HKV|1|X|G|1544
5HKV|1|X|U|1545
5HKV|1|X|A|1546
5HKV|1|X|C|1547
5HKV|1|X|U|1548
5HKV|1|X|C|1549
5HKV|1|X|G|1550
5HKV|1|X|G|1555
5HKV|1|X|G|1556

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2