HL_5HKV_047

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5HKV|1|X|A|2057, 5HKV|1|X|A|2058, 5HKV|1|X|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_047 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.0817

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5HKV|1|X|G|2054
5HKV|1|X|U|2055
5HKV|1|X|G|2056
5HKV|1|X|A|2057
5HKV|1|X|A|2058
5HKV|1|X|G|2059
5HKV|1|X|A|2060
5HKV|1|X|U|2061
5HKV|1|X|G|2062
5HKV|1|X|C|2063

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain O

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32