HL_5HKV_063

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5HKV|1|X|G|2778, 5HKV|1|X|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_063 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1283

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

5HKV|1|X|C|2772
5HKV|1|X|U|2773
5HKV|1|X|G|2774
5HKV|1|X|A|2775
5HKV|1|X|A|2776
5HKV|1|X|A|2777
5HKV|1|X|G|2778
5HKV|1|X|C|2779
5HKV|1|X|A|2780
5HKV|1|X|U|2781
5HKV|1|X|C|2782
5HKV|1|X|U|2783
5HKV|1|X|A|2784
5HKV|1|X|A|2785
5HKV|1|X|G|2786

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13