HL_5HKV_065

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

5HKV|1|X|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_065 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.0881

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5HKV|1|X|A|2839
5HKV|1|X|A|2840
5HKV|1|X|A|2841
5HKV|1|X|G|2842
5HKV|1|X|A|2843
5HKV|1|X|U|2844
5HKV|1|X|G|2845
5HKV|1|X|A|2846
5HKV|1|X|U|2847

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17