HL_5HKV_068

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAACUUACGUUCCG

Length

14 nucleotides

Bulged bases

5HKV|1|Y|G|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|Y|C|79
5HKV|1|Y|A|80
5HKV|1|Y|A|81
5HKV|1|Y|C|82
5HKV|1|Y|U|83
5HKV|1|Y|U|84
5HKV|1|Y|A|85
5HKV|1|Y|C|86
5HKV|1|Y|G|87
5HKV|1|Y|U|88
5HKV|1|Y|U|89
5HKV|1|Y|C|90
5HKV|1|Y|C|91
5HKV|1|Y|G|92

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain W

50S ribosomal protein L30

Chain X

Large subunit ribosomal RNA; LSU rRNA