HL_5HKV_072
3D structure
- PDB id
- 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- UUACUAACGA
- Length
- 10 nucleotides
- Bulged bases
- 5HKV|1|X|U|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HKV_072 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.145
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5HKV|1|X|U|59
5HKV|1|X|U|60
5HKV|1|X|A|61
5HKV|1|X|C|62
5HKV|1|X|U|63
5HKV|1|X|A|64
5HKV|1|X|A|65
5HKV|1|X|C|66
5HKV|1|X|G|67
5HKV|1|X|A|68
Current chains
- Chain X
- 23s ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain Q
- 50S ribosomal protein L23
- Chain V
- 50S ribosomal protein L29
Coloring options: