HL_5HL7_006

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5HL7|1|X|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0775

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5HL7|1|X|G|197
5HL7|1|X|A|198
5HL7|1|X|A|199
5HL7|1|X|A|200
5HL7|1|X|C|201
5HL7|1|X|A|202
5HL7|1|X|U|203
5HL7|1|X|C|204

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28