HL_5HL7_049

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

5HL7|1|X|U|2238, 5HL7|1|X|U|2240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_049 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.1655

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

5HL7|1|X|C|2236
5HL7|1|X|U|2237
5HL7|1|X|U|2238
5HL7|1|X|A|2239
5HL7|1|X|U|2240
5HL7|1|X|C|2241
5HL7|1|X|G|2242

Current chains

Chain X

23S ribosomal RNA

Nearby chains