HL_5HL7_052

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGUUGAAAUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_052 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.4034

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|G|2330
5HL7|1|X|G|2331
5HL7|1|X|U|2332
5HL7|1|X|U|2333
5HL7|1|X|G|2334
5HL7|1|X|A|2336
5HL7|1|X|A|2337
5HL7|1|X|A|2338
5HL7|1|X|U|2339
5HL7|1|X|C|2340

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain Y

5S ribosomal RNA; 5S rRNA