HL_5HL7_063

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5HL7|1|X|G|2778, 5HL7|1|X|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_063 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1084

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

5HL7|1|X|C|2772
5HL7|1|X|U|2773
5HL7|1|X|G|2774
5HL7|1|X|A|2775
5HL7|1|X|A|2776
5HL7|1|X|A|2777
5HL7|1|X|G|2778
5HL7|1|X|C|2779
5HL7|1|X|A|2780
5HL7|1|X|U|2781
5HL7|1|X|C|2782
5HL7|1|X|U|2783
5HL7|1|X|A|2784
5HL7|1|X|A|2785
5HL7|1|X|G|2786

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13