HL_5HL7_075

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UUAACG

Length

6 nucleotides

Bulged bases

5HL7|1|X|A|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_075 not in the Motif Atlas

Homologous match to HL_4WF9_071

Geometric discrepancy: 0.3622

The information below is about HL_4WF9_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5HL7|1|X|U|1762
5HL7|1|X|U|1763
5HL7|1|X|A|1764
5HL7|1|X|A|1765
5HL7|1|X|C|1766
5HL7|1|X|G|1767

Current chains

Chain X

23S ribosomal RNA

Nearby chains