3D structure

PDB id
5HR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GUUCGAAUC
Length
9 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_22280.5
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
71

Unit IDs

5HR7|1|D|G|52
5HR7|1|D|U|53
5HR7|1|D|U|54
5HR7|1|D|C|55
5HR7|1|D|G|56
5HR7|1|D|A|57
5HR7|1|D|A|58
5HR7|1|D|U|59
5HR7|1|D|C|60

Current chains

Chain D
tRNA Glu

Nearby chains

No other chains within 10Å

Coloring options:

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