3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
5I4L|1|1|G|1507, 5I4L|1|1|U|1511
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5I4L_032 not in the Motif Atlas
Homologous match to HL_5TBW_032
Geometric discrepancy: 0.0503
The information below is about HL_5TBW_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

5I4L|1|1|A|1506
5I4L|1|1|G|1507
5I4L|1|1|C|1508
5I4L|1|1|A|1509
5I4L|1|1|G|1510
5I4L|1|1|U|1511
5I4L|1|1|U|1512

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M7
60S ribosomal protein L17-A
Chain M9
60S ribosomal protein L19-A
Chain O9
60S ribosomal protein L39

Coloring options:


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