HL_5I4L_088

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5I4L|1|2|U|718, 5I4L|1|2|U|719, 5I4L|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|2|G|703
5I4L|1|2|C|704
5I4L|1|2|U|705
5I4L|1|2|A|706
5I4L|1|2|A|707
5I4L|1|2|C|708
5I4L|1|2|C|709
5I4L|1|2|U|710
5I4L|1|2|U|711
5I4L|1|2|G|712
5I4L|1|2|A|713
5I4L|1|2|G|714
5I4L|1|2|U|715
5I4L|1|2|C|716
5I4L|1|2|C|717
5I4L|1|2|U|718
5I4L|1|2|U|719
5I4L|1|2|G|720
5I4L|1|2|U|721
5I4L|1|2|G|722
5I4L|1|2|G|723
5I4L|1|2|C|724
5I4L|1|2|U|725
5I4L|1|2|C|726
5I4L|1|2|U|727
5I4L|1|2|U|728
5I4L|1|2|G|729
5I4L|1|2|G|730
5I4L|1|2|C|731
5I4L|1|2|G|732
5I4L|1|2|A|733
5I4L|1|2|A|734
5I4L|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A