HL_5I4L_097
3D structure
- PDB id
- 5I4L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5I4L_097 not in the Motif Atlas
- Homologous match to HL_4V88_211
- Geometric discrepancy: 0.0965
- The information below is about HL_4V88_211
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5I4L|1|2|C|1121
5I4L|1|2|G|1122
5I4L|1|2|C|1123
5I4L|1|2|A|1124
5I4L|1|2|A|1125
5I4L|1|2|G|1126
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q1
- 60S ribosomal protein L41-A
- Chain Q3
- 60S ribosomal protein L43-A
Coloring options: