3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5I4L_097 not in the Motif Atlas
Homologous match to HL_4V88_211
Geometric discrepancy: 0.0965
The information below is about HL_4V88_211
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

5I4L|1|2|C|1121
5I4L|1|2|G|1122
5I4L|1|2|C|1123
5I4L|1|2|A|1124
5I4L|1|2|A|1125
5I4L|1|2|G|1126

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain Q1
60S ribosomal protein L41-A
Chain Q3
60S ribosomal protein L43-A

Coloring options:


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