HL_5I4L_111

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAUUGCAGAAUUCCGUGAA

Length

21 nucleotides

Bulged bases

5I4L|1|4|U|81, 5I4L|1|4|C|84, 5I4L|1|4|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_111 not in the Motif Atlas

Homologous match to HL_8P9A_187

Geometric discrepancy: 0.1494

The information below is about HL_8P9A_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51921.1

Basepair signature

cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5I4L|1|4|U|69
5I4L|1|4|G|70
5I4L|1|4|A|71
5I4L|1|4|A|72
5I4L|1|4|U|73
5I4L|1|4|U|74
5I4L|1|4|G|75
5I4L|1|4|C|76
5I4L|1|4|A|77
5I4L|1|4|G|78
5I4L|1|4|A|79
5I4L|1|4|A|80
5I4L|1|4|U|81
5I4L|1|4|U|82
5I4L|1|4|C|83
5I4L|1|4|C|84
5I4L|1|4|G|85
5I4L|1|4|U|86
5I4L|1|4|G|87
5I4L|1|4|A|88
5I4L|1|4|A|89

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain N6

60S ribosomal protein L26-A

Chain O5

60S ribosomal protein L35-A

Chain O7

60S ribosomal protein L37-A

Chain O9

60S ribosomal protein L39

Chain o5

60S ribosomal protein L35-A